PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_8436285E5.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 256aa    MW: 28306.9 Da    PI: 4.6014
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_8436285E5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.84.4e-55781821102
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql+ fw++q   ie+atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+tr
  Traes_6DS_8436285E5.1  78 QLREFWATQmeeIEQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITR 165
                            89*****996677899************************************************************************ PP

                  NF-YC  86 tdifdflvdivprdelk 102
                            tdi+dflvdi+prd++k
  Traes_6DS_8436285E5.1 166 TDIYDFLVDIIPRDDMK 182
                            **************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-3358172IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.1E-3792164IPR009072Histone-fold
PfamPF008087.9E-21100163IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEPSSQPEPV VGVATAGSQA YPPPAAYPAP AMPAAIPPGS QPAVPFPANP AQLSAQHQLV  60
YQQAQQFHQQ LQQQQQQQLR EFWATQMEEI EQATDFKNHT LPLARIKKIM KADEDVRMIS  120
AEAPVVFAKA CEVFILELTL RSWMHTEENK RRTLQKNDIA AAITRTDIYD FLVDIIPRDD  180
MKEEGLGLPR VGLPPAALGA PADAYPPYYY VPAQQVPGVG MMYGGQQGHP VAYAWQQPQG  240
QQAEEAPEEQ QQSPSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B7e-4385178297NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9027930.0GU902793.1 Triticum monococcum nuclear transcription factor Y subunit C7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570159.11e-134PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG72e-73NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLW5GPQ50.0W5GPQ5_WHEAT; Uncharacterized protein
TrEMBLN1R3M00.0N1R3M0_AEGTA; Nuclear transcription factor Y subunit C-2
STRINGMLOC_53118.11e-156(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-65nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]